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» Formal specification: a roadmap
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ICPW
2007
13 years 9 months ago
Mind the gap!: Transcending the tunnel view on ontology engineering
The key objective of communal knowledge sharing at the scale of the World Wide Web is the ability to collaborate and integrate within and between communities. Ontologies, being fo...
Pieter De Leenheer, Stijn Christiaens
FMSB
2008
199views Formal Methods» more  FMSB 2008»
13 years 9 months ago
Bounded Asynchrony: Concurrency for Modeling Cell-Cell Interactions
We introduce bounded asynchrony, a notion of concurrency tailored to the modeling of biological cell-cell interactions. Bounded asynchrony is the result of a scheduler that bounds ...
Jasmin Fisher, Thomas A. Henzinger, Maria Mateescu...
FMSB
2008
129views Formal Methods» more  FMSB 2008»
13 years 9 months ago
Rule-Based Modelling, Symmetries, Refinements
Rule-based modelling is particularly effective for handling the highly combinatorial aspects of cellular signalling. The dynamics is described in terms of interactions between part...
Vincent Danos, Jérôme Feret, Walter F...
DLOG
2000
13 years 9 months ago
Knowledge Representation on the Web
Recently, there has been a wide interest in using ontologies on the Web. As a basis for this, RDF Schema (RDFS) provides means to define vocabulary, structure and constraints for ...
Stefan Decker, Dieter Fensel, Frank van Harmelen, ...
BMCBI
2006
147views more  BMCBI 2006»
13 years 7 months ago
A case study in pathway knowledgebase verification
Background: Biological databases and pathway knowledgebases are proliferating rapidly. We are developing software tools for computer-aided hypothesis design and evaluation, and we...
Stephen A. Racunas, Nigam Shah, Nina V. Fedoroff