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    BMCBI
    2010
    177views more  BMCBI 2010»
    Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets
    13 years 8 months ago
    Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets
    Download  www.biomedcentral.com
    Background: Phylogenetic analysis can be used to divide a protein family into subfamilies in the absence of experimental information. Most phylogenetic analysis methods utilize mu...
    Aydin Albayrak, Hasan H. Otu, Ugur O. Sezerman
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    BMCBI
    2007
    139views more  BMCBI 2007»
    XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
    13 years 8 months ago
    XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
    Download  www.biomedcentral.com
    Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
    Aaron M. Newman, James B. Cooper
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    BMCBI
    2007
    88views more  BMCBI 2007»
    Use of DNA melting simulation software for in silico diagnostic assay design: targeting regions with complex melting curves and
    13 years 8 months ago
    Use of DNA melting simulation software for in silico diagnostic assay design: targeting regions with complex melting curves and
    Download  www.biomedcentral.com
    Background: DNA melting curve analysis using double-stranded DNA-specific dyes such as SYTO9 produce complex and reproducible melting profiles, resulting in the detection of multi...
    John P. Rasmussen, Christopher P. Saint, Paul T. M...
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    BMCBI
    2008
    131views more  BMCBI 2008»
    K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space
    13 years 8 months ago
    K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space
    Download  www.biomedcentral.com
    Background: Kernel-based classification and regression methods have been successfully applied to modelling a wide variety of biological data. The Kernel-based Orthogonal Projectio...
    Max Bylesjö, Mattias Rantalainen, Jeremy K. N...
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    BMCBI
    2008
    131views more  BMCBI 2008»
    CoCoNUT: an efficient system for the comparison and analysis of genomes
    13 years 8 months ago
    CoCoNUT: an efficient system for the comparison and analysis of genomes
    Download  theorie.informatik.uni-ulm.de
    Background: Comparative genomics is the analysis and comparison of genomes from different species. This area of research is driven by the large number of sequenced genomes and hea...
    Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohl...
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