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» Foundations of Similarity and Utility
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BMCBI
2004
120views more  BMCBI 2004»
13 years 7 months ago
An approach to large scale identification of non-obvious structural similarities between proteins
Background: A new sequence independent bioinformatics approach allowing genome-wide search for proteins with similar three dimensional structures has been developed. By utilizing ...
Artem Cherkasov, Steven J. M. Jones
BMCBI
2004
150views more  BMCBI 2004»
13 years 7 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
VLDB
2001
ACM
129views Database» more  VLDB 2001»
14 years 1 days ago
Similarity Search for Adaptive Ellipsoid Queries Using Spatial Transformation
Similarity retrieval mechanisms should utilize generalized quadratic form distance functions as well as the Euclidean distance function since ellipsoid queries parameters may vary...
Yasushi Sakurai, Masatoshi Yoshikawa, Ryoji Kataok...
SERVICES
2008
103views more  SERVICES 2008»
13 years 9 months ago
Grouping Distributed Stream Query Services by Operator Similarity and Network Locality
Distributed stream query services must simultaneously process a large number of complex, continuous queries with stringent performance requirements while utilizing distributed pro...
Sangeetha Seshadri, Bhuvan Bamba, Brian F. Cooper,...
SSDBM
2010
IEEE
117views Database» more  SSDBM 2010»
14 years 21 days ago
Finding Top-k Similar Pairs of Objects Annotated with Terms from an Ontology
With the growing focus on semantic searches and interpretations, an increasing number of standardized vocabularies and ontologies are being designed and used to describe data. We ...
Arnab Bhattacharya, Abhishek Bhowmick, Ambuj K. Si...