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» Fragment assembly with double-barreled data
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ESA
2001
Springer
105views Algorithms» more  ESA 2001»
14 years 5 days ago
SNPs Problems, Complexity, and Algorithms
Abstract. Single nucleotide polymorphisms (SNPs) are the most frequent form of human genetic variation. They are of fundamental importance for a variety of applications including m...
Giuseppe Lancia, Vineet Bafna, Sorin Istrail, Ross...
SCFBM
2008
91views more  SCFBM 2008»
13 years 7 months ago
Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data
Background: The advent of pyrophosphate sequencing makes large volumes of sequencing data available at a lower cost than previously possible. However, the short read lengths are d...
Nicolas J. Parker, Andrew G. Parker
BIOCOMP
2007
13 years 9 months ago
xMAN: extreme MApping of oligoNucleotides
Background: The ability to rapidly map millions of oligonucleotide fragments to a reference genome is crucial to many high throughput genomic technologies. Results: We propose an ...
Wei Li, Jason S. Carroll, Myles Brown, X. Shirley ...
ATAL
2004
Springer
14 years 1 months ago
Agents Swarming in Semantic Spaces to Corroborate Hypotheses
To anticipate and prevent acts of terrorism, Indications and Warnings analysts try to connect clues gleaned from massive quantities of complex data. Multi-agent approaches to supp...
Peter Weinstein, H. Van Dyke Parunak, Paul Chiusan...
IPPS
2009
IEEE
14 years 2 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...