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ICA3PP
2005
Springer
14 years 2 months ago
GridMD: Program Architecture for Distributed Molecular Simulation
In the present work we describe architectural concepts of the distributed molecular simulation package GridMD. The main purpose of this work is to underline the construction patter...
Ilya Valuev
PLDI
1999
ACM
14 years 1 months ago
Load-Reuse Analysis: Design and Evaluation
Load-reuse analysis finds instructions that repeatedly access the same memory location. This location can be promoted to a register, eliminating redundant loads by reusing the re...
Rastislav Bodík, Rajiv Gupta, Mary Lou Soff...
CPAIOR
2008
Springer
13 years 10 months ago
The Accuracy of Search Heuristics: An Empirical Study on Knapsack Problems
Theoretical models for the evaluation of quickly improving search strategies, like limited discrepancy search, are based on specific assumptions regarding the probability that a va...
Daniel H. Leventhal, Meinolf Sellmann
BMCBI
2008
153views more  BMCBI 2008»
13 years 8 months ago
Estimating the size of the solution space of metabolic networks
Background: Cellular metabolism is one of the most investigated system of biological interactions. While the topological nature of individual reactions and pathways in the network...
Alfredo Braunstein, Roberto Mulet, Andrea Pagnani
BMCBI
2008
211views more  BMCBI 2008»
13 years 8 months ago
CPSP-tools - Exact and complete algorithms for high-throughput 3D lattice protein studies
Background: The principles of protein folding and evolution pose problems of very high inherent complexity. Often these problems are tackled using simplified protein models, e.g. ...
Martin Mann, Sebastian Will, Rolf Backofen
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