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AAAI
2008
14 years 10 days ago
Efficient Haplotype Inference with Answer Set Programming
Identifying maternal and paternal inheritance is essential to be able to find the set of genes responsible for a particular disease. Although we have access to genotype data (gene...
Esra Erdem, Ferhan Türe
AAAI
2007
14 years 10 days ago
Learning Graphical Model Structure Using L1-Regularization Paths
Sparsity-promoting L1-regularization has recently been succesfully used to learn the structure of undirected graphical models. In this paper, we apply this technique to learn the ...
Mark W. Schmidt, Alexandru Niculescu-Mizil, Kevin ...
ACSD
2007
IEEE
93views Hardware» more  ACSD 2007»
13 years 11 months ago
SAT-based Unbounded Model Checking of Timed Automata
We present an improvement of the SAT-based Unbounded Model Checking (UMC) algorithm. UMC, a symbolic approach introduced in [7], uses propositional formulas in conjunctive normal ...
Wojciech Penczek, Maciej Szreter
EVOW
2008
Springer
13 years 11 months ago
Reactive Stochastic Local Search Algorithms for the Genomic Median Problem
Abstract. The genomic median problem is an optimization problem inspired by a biological issue: it aims at finding the chromosome organization of the common ancestor to multiple li...
Renaud Lenne, Christine Solnon, Thomas Stützl...
AAAI
2004
13 years 11 months ago
PROBCONS: Probabilistic Consistency-Based Multiple Alignment of Amino Acid Sequences
Obtaining an accurate multiple alignment of protein sequences is a difficult computational problem for which many heuristic techniques sacrifice optimality to achieve reasonable r...
Chuong B. Do, Michael Brudno, Serafim Batzoglou