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BMCBI
2005
123views more  BMCBI 2005»
13 years 10 months ago
PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability
Background: Protein sequence alignments have become indispensable for virtually any evolutionary, structural or functional study involving proteins. Modern sequence search and com...
Mindaugas Margelevicius, Ceslovas Venclovas
ECLIPSE
2006
ACM
14 years 4 months ago
HAM: cross-cutting concerns in Eclipse
As programs evolve, newly added functionality sometimes no longer aligns with the original design, ending up scattered across the software system. Aspect mining tries to identify ...
Silvia Breu, Thomas Zimmermann, Christian Lindig
BMCBI
2010
50views more  BMCBI 2010»
13 years 10 months ago
Scanner calibration revisited
Background: Calibration of a microarray scanner is critical for accurate interpretation of microarray results. Shi et al. (BMC Bioinformatics, 2005, 6, Art. No. S11 Suppl. 2.) rep...
Alexander E. Pozhitkov
BMCBI
2011
13 years 5 months ago
Appearance frequency modulated gene set enrichment testing
Background: Gene set enrichment testing has helped bridge the gap from an individual gene to a systems biology interpretation of microarray data. Although gene sets are defined a ...
Jun Ma, Maureen A. Sartor, H. V. Jagadish
BMCBI
2008
95views more  BMCBI 2008»
13 years 10 months ago
PURE: A webserver for the prediction of domains in unassigned regions in proteins
Background: Protein domains are the structural and functional units of proteins. The ability to parse proteins into different domains is important for effective classification, un...
Chilamakuri C. S. Reddy, Khader Shameer, Bernard O...