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WOB
2004
134views Bioinformatics» more  WOB 2004»
13 years 9 months ago
Reconstruction of Phylogenetic Trees using the Ant Colony Optimization Paradigm
We developed a new approach for the reconstruction of phylogenetic trees using ant colony optimization metaheuristics.Atree is constructed using a fully connected graph and the pro...
Heitor S. Lopes, Mauricio Perretto
APVIS
2004
13 years 9 months ago
Optimal Leaf Ordering for Two and a Half Dimensional Phylogenetic Tree Visualisation
Two and a half dimensional graph visualisation is the stacking of a set of related graphs into the third dimension to support visual comparison. A new aesthetic criterion is intro...
Tim Dwyer, Falk Schreiber
JAR
2007
72views more  JAR 2007»
13 years 7 months ago
Inferring Phylogenetic Trees Using Answer Set Programming
We describe the reconstruction of a phylogeny for a set of taxa, with a character-based cladistics approach, in a declarative knowledge representation formalism, and show how to u...
Daniel R. Brooks, Esra Erdem, Selim T. Erdogan, Ja...
CSB
2004
IEEE
141views Bioinformatics» more  CSB 2004»
13 years 11 months ago
MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies
A new computational method to study within-host viral evolution is explored to better understand the evolution and pathogenesis of viruses. Traditional phylogenetic tree methods a...
Patricia Buendia, Giri Narasimhan
BMCBI
2006
129views more  BMCBI 2006»
13 years 7 months ago
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity
Background: Evolutionary genomics requires management and filtering of large numbers of diverse genomic sequences for accurate analysis and inference on evolutionary processes of ...
Laila A. Nahum, Matthew T. Reynolds, Zhengyuan O. ...