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NAR
2007
109views more  NAR 2007»
13 years 9 months ago
GeneTrees: a phylogenomics resource for prokaryotes
The GeneTrees phylogenomics system pursues comparative genomic analyses from the perspective of gene phylogenies for individual genes. The GeneTrees project has the goal of provid...
Yuying Tian, Allan W. Dickerman
ISBRA
2010
Springer
13 years 8 months ago
A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure
The random accumulation of variations in the human genome over time implicitly encodes a history of how human populations have arisen, dispersed, and intermixed since we emerged as...
Ming-Chi Tsai, Guy E. Blelloch, R. Ravi, Russell S...
PSB
2003
13 years 11 months ago
Towards Identifying Lateral Gene Transfer Events
This paper is concerned with evaluating the performance of the model and algorithm in [7] for detecting lateral gene transfers events. Using a Poisson process to describe arrival t...
Louigi Addario-Berry, Michael T. Hallett, Jens Lag...
BMCBI
2010
83views more  BMCBI 2010»
13 years 10 months ago
Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins
Background: Phylogenies capture the evolutionary ancestry linking extant species. Correlations and similarities among a set of species are mediated by and need to be understood in...
William P. Kelly, Michael P. H. Stumpf
COCOON
2005
Springer
14 years 3 months ago
RIATA-HGT: A Fast and Accurate Heuristic for Reconstructing Horizontal Gene Transfer
Horizontal gene transfer (HGT) plays a major role in microbial genome diversiļ¬cation, and is claimed to be rampant among various groups of genes in bacteria. Further, HGT is a ma...
Luay Nakhleh, Derek A. Ruths, Li-San Wang