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GCB
2009
Springer
105views Biometrics» more  GCB 2009»
14 years 4 months ago
Maximum Likelihood Estimation of Weight Matrices for Targeted Homology Search
: Genome annotation relies to a large extent on the recognition of homologs to already known genes. The starting point for such protocols is a collection of known sequences from on...
Peter Menzel, Jan Gorodkin, Peter F. Stadler
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
14 years 3 months ago
A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance
Phylogenetic tree searching algorithms often produce thousands of trees which biologists save in Newick format in order to perform further analysis. Unfortunately, Newick is neithe...
Robert S. Boyer, Warren A. Hunt Jr., Serita M. Nel...
WOB
2004
134views Bioinformatics» more  WOB 2004»
13 years 11 months ago
Reconstruction of Phylogenetic Trees using the Ant Colony Optimization Paradigm
We developed a new approach for the reconstruction of phylogenetic trees using ant colony optimization metaheuristics.Atree is constructed using a fully connected graph and the pro...
Heitor S. Lopes, Mauricio Perretto
CCGRID
2010
IEEE
13 years 11 months ago
SciCloud: Scientific Computing on the Cloud
SciCloud is a project studying the scope of establishing private clouds at universities. With these clouds, researchers can efficiently use the already existing resources in solvin...
Satish Srirama, Oleg Batrasev, Eero Vainikko
IWPEC
2010
Springer
13 years 8 months ago
Partial Kernelization for Rank Aggregation: Theory and Experiments
RANK AGGREGATION is important in many areas ranging from web search over databases to bioinformatics. The underlying decision problem KEMENY SCORE is NP-complete even in case of fo...
Nadja Betzler, Robert Bredereck, Rolf Niedermeier