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DNA
2004
Springer
14 years 3 months ago
Parallelism in Gene Assembly
The process of gene assembly in ciliates, an ancient group of organisms, is one of the most complex instances of DNA manipulation known in any organisms. This process is fascinatin...
Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenber...
DNA
2004
Springer
146views Bioinformatics» more  DNA 2004»
14 years 3 months ago
Partial Words for DNA Coding
A very basic problem in all DNA computations is finding a good encoding. Apart from the fact that they must provide a solution, the strands involved should not exhibit any undesir...
Peter Leupold
ECAI
2004
Springer
14 years 3 months ago
Preferences for Queries in a Mediator Approach
The problem of integrating relevant information obtained from multiple heterogeneous sources is a complex task, with which biologists are now faced. In this paper, we address the p...
Alain Bidault, Sarah Cohen Boulakia, Christine Fro...
WABI
2004
Springer
14 years 3 months ago
Local Search Heuristic for Rigid Protein Docking
Abstract. We give an algorithm that locally improves the fit between two proteins modeled as space-filling diagrams. The algorithm defines the fit in purely geometric terms and...
Vicky Choi, Pankaj K. Agarwal, Herbert Edelsbrunne...
CLUSTER
2003
IEEE
14 years 3 months ago
A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model
Hmmpfam is a widely used computation-intensive bioinformatics software for sequence classification. The contribution of this paper is the first largely scalable and robust clust...
Weirong Zhu, Yanwei Niu, Jizhu Lu, Chuan Shen, Gua...