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CF
2009
ACM
14 years 4 months ago
Quantitative analysis of sequence alignment applications on multiprocessor architectures
The exponential growth of databases that contains biological information (such as protein and DNA data) demands great efforts to improve the performance of computational platforms...
Friman Sánchez, Alex Ramírez, Mateo ...
ICPADS
2008
IEEE
14 years 4 months ago
Parallel Large Scale Inference of Protein Domain Families
The resolution of combinatorial assortments of protein sequences into domains is a prerequisite for protein sequence interpretation. However the recognition and clustering of homo...
Daniel Kahn, Clément Rezvoy, Fréd&ea...
IPPS
2007
IEEE
14 years 4 months ago
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
VLDB
2007
ACM
135views Database» more  VLDB 2007»
14 years 3 months ago
Self-Organizing Schema Mappings in the GridVine Peer Data Management System
GridVine is a Peer Data Management System based on a decentralized access structure. Built following the principle of data independence, it separates a logical layer – where dat...
Philippe Cudré-Mauroux, Suchit Agarwal, Adr...
VLDB
2007
ACM
125views Database» more  VLDB 2007»
14 years 3 months ago
Data Integration with Uncertainty
This paper reports our first set of results on managing uncertainty in data integration. We posit that data-integration systems need to handle uncertainty at three levels, and do...
Xin Luna Dong, Alon Y. Halevy, Cong Yu