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CSB
2004
IEEE
106views Bioinformatics» more  CSB 2004»
13 years 11 months ago
Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli
RNA genes lack most of the signals used for protein gene identification. A major shortcoming of previous discriminative methods to distinguish functional RNA (fRNA) genes from oth...
Richard F. Meraz, Xiaofeng He, Chris H. Q. Ding, S...
BMCBI
2010
117views more  BMCBI 2010»
13 years 2 months ago
Screensaver: an open source lab information management system (LIMS) for high throughput screening facilities
Background: Shared-usage high throughput screening (HTS) facilities are becoming more common in academe as large-scale small molecule and genome-scale RNAi screening strategies ar...
Andrew N. Tolopko, John P. Sullivan, Sean D. Erick...
BMCBI
2005
104views more  BMCBI 2005»
13 years 7 months ago
Wildfire: distributed, Grid-enabled workflow construction and execution
Background: We observe two trends in bioinformatics: (i) analyses are increasing in complexity, often requiring several applications to be run as a workflow; and (ii) multiple CPU...
Francis Tang, Ching Lian Chua, Liang-Yoong Ho, Yun...
ISOLA
2010
Springer
13 years 6 months ago
A Linked Data Approach to Sharing Workflows and Workflow Results
A bioinformatics analysis pipeline is often highly elaborate, due to the inherent complexity of biological systems and the variety and size of laboratory publications would be high...
Marco Roos, Sean Bechhofer, Jun Zhao, Paolo Missie...
CSB
2005
IEEE
133views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Biological Pathway Prediction from Multiple Data Sources Using Iterative Bayesian Updating
There is a diversity of functional genomics data, such as gene expression data from microarray experiments, phenotypic data from gene deletion experiments, protein-protein interac...
Corey Powell, Joshua M. Stuart