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COMPLIFE
2006
Springer
14 years 14 days ago
Relational Subgroup Discovery for Descriptive Analysis of Microarray Data
Abstract. This paper presents a method that uses gene ontologies, together with the paradigm of relational subgroup discovery, to help find description of groups of genes different...
Igor Trajkovski, Filip Zelezný, Jakub Tolar...
ISMB
2007
13 years 11 months ago
Computational prediction of host-pathogen protein-protein interactions
Our major effort in this reporting period comprised functional genomic studies of key genes for carbon metabolite and nodulation/nitrogen fixation in Sinorhizobium meliloti, compar...
Matthew D. Dyer, T. M. Murali, Bruno W. S. Sobral
HYBRID
2007
Springer
14 years 18 days ago
Piecewise Constant Feedback Control of Piecewise Affine Gene Network Models
Abstract. The use of hybrid dynamical systems to model gene regulation is impelled by the switch-like behaviour of the latter. Piecewise affine differential equations is one of the...
Etienne Farcot, Jean-Luc Gouzé
BMCBI
2006
92views more  BMCBI 2006»
13 years 8 months ago
Demonstration of two novel methods for predicting functional siRNA efficiency
Background: siRNAs are small RNAs that serve as sequence determinants during the gene silencing process called RNA interference (RNAi). It is well know that siRNA efficiency is cr...
Peilin Jia, Tieliu Shi, Yu-Dong Cai, Yixue Li
RECOMB
2002
Springer
14 years 9 months ago
A new approach to analyzing gene expression time series data
We present algorithms for time-series gene expression analysis that permit the principled estimation of unobserved timepoints, clustering, and dataset alignment. Each expression p...
Ziv Bar-Joseph, Georg Gerber, David K. Gifford, To...