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BMCBI
2010
123views more  BMCBI 2010»
13 years 3 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
BMCBI
2005
98views more  BMCBI 2005»
13 years 8 months ago
DCD - a novel plant specific domain in proteins involved in development and programmed cell death
Background: Recognition of microbial pathogens by plants triggers the hypersensitive reaction, a common form of programmed cell death in plants. These dying cells generate signals...
Raimund Tenhaken, Tobias Doerks, Peer Bork
IWPSE
2003
IEEE
14 years 1 months ago
Reconstruction of Successful Software Evolution Using Clone Detection
In modern software engineering, researchers regard a software system as an organic life form that must continue to evolve to remain successful. Unfortunately, little is known abou...
Filip Van Rysselberghe, Serge Demeyer
BMCBI
2010
74views more  BMCBI 2010»
13 years 8 months ago
A weighted q-gram method for glycan structure classification
Background: Glycobiology pertains to the study of carbohydrate sugar chains, or glycans, in a particular cell or organism. Many computational approaches have been proposed for ana...
Limin Li, Wai-Ki Ching, Takako Yamaguchi, Kiyoko F...
BMCBI
2006
137views more  BMCBI 2006»
13 years 8 months ago
INTEGRATOR: interactive graphical search of large protein interactomes over the Web
Background: The rapid growth of protein interactome data has elevated the necessity and importance of network analysis tools. However, unlike pure text data, network search spaces...
Aaron N. Chang, Jason McDermott, Zachary Frazier, ...