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BMCBI
2010
116views more  BMCBI 2010»
13 years 9 months ago
A hybrid approach to protein folding problem integrating constraint programming with local search
Background: The protein folding problem remains one of the most challenging open problems in computational biology. Simplified models in terms of lattice structure and energy func...
Abu Zafer M. Dayem Ullah, Kathleen Steinhöfel
BMCBI
2004
117views more  BMCBI 2004»
13 years 9 months ago
CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting
Background: All known genomes code for a large number of transcription factors. It is important to develop methods that will reveal how these transcription factors act on a genome...
Henry R. Bigelow, Adam S. Wenick, Allan Wong, Oliv...
GECCO
2005
Springer
132views Optimization» more  GECCO 2005»
14 years 2 months ago
A statistical learning theory approach of bloat
Code bloat, the excessive increase of code size, is an important issue in Genetic Programming (GP). This paper proposes a theoretical analysis of code bloat in the framework of sy...
Sylvain Gelly, Olivier Teytaud, Nicolas Bredeche, ...
COMPLIFE
2005
Springer
14 years 2 months ago
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization
During the last few years new functionalities of RNA have been discovered, renewing the need for computational tools for their analysis. To this respect, multiple sequence alignmen...
Markus Bauer, Gunnar W. Klau, Knut Reinert
ALT
2003
Springer
14 years 6 months ago
Intrinsic Complexity of Uniform Learning
Inductive inference is concerned with algorithmic learning of recursive functions. In the model of learning in the limit a learner successful for a class of recursive functions mus...
Sandra Zilles