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» Functional classification of transcription factor binding si...
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JIB
2006
50views more  JIB 2006»
13 years 7 months ago
Functional classification of transcription factor binding sites: information content as a metric
D. Ashok Reddy, B. V. L. S. Prasad, Chanchal K. Mi...
IDA
2008
Springer
13 years 7 months ago
Transcription factor binding site recognition by regularity matrices based on the natural classification method
A principally new approach to the classifications of nucleotide sequences based on the "natural" classification concept is proposed. As a result of "natural" c...
Eugenii E. Vityaev, K. A. Lapardin, I. V. Khomiche...
BMCBI
2008
128views more  BMCBI 2008»
13 years 7 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
RECOMB
2003
Springer
14 years 7 months ago
Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts
Background: Transcriptional regulation in eukaryotes often involves multiple transcription factors binding to the same transcription control region, and to understand the regulato...
Derek Y. Chiang, Alan M. Moses, Manolis Kamvysseli...
RECOMB
2008
Springer
14 years 7 months ago
A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery
As an increasing number of eukaryotic genomes are being sequenced, comparative studies aimed at detecting regulatory elements in intergenic sequences are becoming more prevalent. M...
Raluca Gordân, Leelavati Narlikar, Alexander...