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» GEVALT: An integrated software tool for genotype analysis
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IPPS
2007
IEEE
14 years 1 months ago
Formal Analysis for Debugging and Performance Optimization of MPI
High-end computing is universally recognized to be a strategic tool for leadership in science and technology. A significant portion of high-end computing is conducted on clusters...
Ganesh Gopalakrishnan, Robert M. Kirby
BMCBI
2010
148views more  BMCBI 2010»
13 years 7 months ago
Calling SNPs without a reference sequence
Background: The most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a refere...
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan...
BMCBI
2008
98views more  BMCBI 2008»
13 years 7 months ago
Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
Background: Illumina Infinium whole genome genotyping (WGG) arrays are increasingly being applied in cancer genomics to study gene copy number alterations and allele-specific aber...
Johan Staaf, Johan Vallon-Christersson, David Lind...
PLDI
2006
ACM
14 years 1 months ago
Precise alias analysis for static detection of web application vulnerabilities
The number and the importance of web applications have increased rapidly over the last years. At the same time, the quantity and impact of security vulnerabilities in such applica...
Nenad Jovanovic, Christopher Kruegel, Engin Kirda
DTJ
1998
171views more  DTJ 1998»
13 years 7 months ago
Measurement and Analysis of C and C++ Performance
ir increasing use of abstraction, modularity, delayed binding, polymorphism, and source reuse, especially when these attributes are used in combination. Modern processor architectu...
Hemant G. Rotithor, Kevin W. Harris, Mark W. Davis