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» Gene Expression Clustering with Functional Mixture Models
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NAR
2007
85views more  NAR 2007»
13 years 8 months ago
The TIGR Rice Genome Annotation Resource: improvements and new features
In The Institute for Genomic Research Rice Genome Annotation project (http://rice.tigr.org), we have continued to update the rice genome sequence with new data and improve the qua...
Shu Ouyang, Wei Zhu, John A. Hamilton Jr., Haining...
BIOINFORMATICS
2006
82views more  BIOINFORMATICS 2006»
13 years 9 months ago
ZooDDD: a cross-species database for digital differential display analysis
SUMMARY: In this paper, we combined EST information from the UniGene database and orthologous relationships from the Ensembl database to construct a ZooDDD database. The primary f...
Yun-Ching Chen, Chung-Der Hsiao, Wen-Dar Lin, Chun...
BMCBI
2010
149views more  BMCBI 2010»
13 years 9 months ago
Identifying common prognostic factors in genomic cancer studies: A novel index for censored outcomes
Background: With the growing number of public repositories for high-throughput genomic data, it is of great interest to combine the results produced by independent research groups...
Sigrid Rouam, Thierry Moreau, Philippe Broët
CSB
2005
IEEE
130views Bioinformatics» more  CSB 2005»
14 years 2 months ago
iSimBioSys: An "In Silico" Discrete Event Simulation Framework for Modeling Biological Systems
The genome projects have provided comprehensive information about the basic building blocks of life. The next challenge is to understand how biological functions emerge from compl...
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. ...
RECOMB
2002
Springer
14 years 9 months ago
Probabilistic hierarchical clustering for biological data
Biological data, such as gene expression profiles or protein sequences, is often organized in a hierarchy of classes, where the instances assigned to "nearby" classes in...
Eran Segal, Daphne Koller