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» Gene assembly in Ciliates
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FUIN
2006
79views more  FUIN 2006»
13 years 7 months ago
Simple Gene Assembly Is Deterministic
We investigate in this paper a simple intramolecular model for gene assembly in ciliates. Unlike the general intramolecular model, the folds that a micronuclear chromosome may for...
Miika Langille, Ion Petre
IJFCS
2008
102views more  IJFCS 2008»
13 years 7 months ago
Gene Assembly Models and Boolean Circuits
We propose two different ways to simulate Boolean circuits in the framework of ciliate computations, based on the intramolecular and on the intermolecular gene assembly models wit...
Tseren-Onolt Ishdorj, Ion Petre
TCS
2010
13 years 5 months ago
Computing the graph-based parallel complexity of gene assembly
We consider a graph-theoretical formalization of the process of gene assembly in ciliates introduced in Ehrenfeucht et al (2003), where a gene is modeled as a signed graph. The ge...
Artiom Alhazov, Chang Li, Ion Petre
TCS
2008
13 years 7 months ago
Sequential vs. parallel complexity in simple gene assembly
We investigate some differences between the general intramolecular model for gene assembly and its restricted simple model. Although both models satisfactorily sort all current ex...
Miika Langille, Ion Petre
GG
2004
Springer
14 years 22 days ago
Tutorial on DNA Computing and Graph Transformation
that graph transformations provide the right level of abstraction, and useful technical tools for studying gene assembly. On the other hand, the gene assembly process inspires a ne...
Tero Harju, Ion Petre, Grzegorz Rozenberg