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» Gene finding in novel genomes
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BIBM
2008
IEEE
106views Bioinformatics» more  BIBM 2008»
13 years 10 months ago
Uncovering Genomic Reassortments among Influenza Strains by Enumerating Maximal Bicliques
The evolutionary histories of viral genomes have received significant recent attention due to their importance in understanding virulence and the corresponding ramifications to pu...
Niranjan Nagarajan, Carl Kingsford
PPSN
2000
Springer
13 years 11 months ago
Optimization as Side-Effect of Evolving Allelopathic Diversity
Many bacteria carry gene complexes that code for a toxin-antidote pair, e.g. colicin systems. Such gene complexes can be advantageous for its host by killing competitor bacteria wh...
Ludo Pagie, Paulien Hogeweg
BMCBI
2006
112views more  BMCBI 2006»
13 years 8 months ago
GENOMEMASKER package for designing unique genomic PCR primers
Background: The design of oligonucleotides and PCR primers for studying large genomes is complicated by the redundancy of sequences. The eukaryotic genomes are particularly diffic...
Reidar Andreson, Eric Reppo, Lauris Kaplinski, Mai...
BMCBI
2011
12 years 11 months ago
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Background: The popularity of massively parallel exome and transcriptome sequencing projects demands new data mining tools with a comprehensive set of features to support a wide r...
Xutao Deng
BMCBI
2005
223views more  BMCBI 2005»
13 years 8 months ago
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling
Background: The completion of the sequencing of human, mouse and rat genomes and knowledge of cross-species gene homologies enables studies of differential gene expression in anim...
Hong Fang, Weida Tong, Roger Perkins, Leming M. Sh...