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» Gene function prediction using labeled and unlabeled data
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JCB
2006
129views more  JCB 2006»
15 years 4 months ago
GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data
Genome-wide microarray designs containing millions to hundreds of millions of probes are available for a variety of mammals, including mouse and human. These genome tiling arrays ...
Brendan J. Frey, Quaid Morris, Timothy R. Hughes
BMCBI
2010
118views more  BMCBI 2010»
15 years 4 months ago
Bacillus anthracis genome organization in light of whole transcriptome sequencing
Emerging knowledge of whole prokaryotic transcriptomes could validate a number of theoretical concepts introduced in the early days of genomics. What are the rules connecting gene...
Jeffrey Martin, Wenhan Zhu, Karla D. Passalacqua, ...
LREC
2008
89views Education» more  LREC 2008»
15 years 5 months ago
Parser Evaluation and the BNC: Evaluating 4 constituency parsers with 3 metrics
We evaluate discriminative parse reranking and parser self-training on a new English test set using four versions of the Charniak parser and a variety of parser evaluation metrics...
Jennifer Foster, Josef van Genabith
BMCBI
2005
151views more  BMCBI 2005»
15 years 3 months ago
stam - a Bioconductor compliant R package for structured analysis of microarray data
Background: Genome wide microarray studies have the potential to unveil novel disease entities. Clinically homogeneous groups of patients can have diverse gene expression profiles...
Claudio Lottaz, Rainer Spang
BMCBI
2008
95views more  BMCBI 2008»
15 years 4 months ago
Mining protein networks for synthetic genetic interactions
Background: The local connectivity and global position of a protein in a protein interaction network are known to correlate with some of its functional properties, including its e...
Sri R. Paladugu, Shan Zhao, Animesh Ray, Alpan Rav...