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» Gene functional classification from heterogeneous data
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180
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BMCBI
2010
104views more  BMCBI 2010»
14 years 10 months ago
A systematic study of genome context methods: calibration, normalization and combination
Background: Genome context methods have been introduced in the last decade as automatic methods to predict functional relatedness between genes in a target genome using the patter...
Luciana Ferrer, Joseph M. Dale, Peter D. Karp
134
Voted
ESANN
2004
15 years 5 months ago
Dimensionality reduction and classification using the distribution mapping exponent
: Probability distribution mapping function, which maps multivariate data distribution to the function of one variable, is introduced. Distributionmapping exponent (DME) is somethi...
Marcel Jirina
128
Voted
BMCBI
2010
127views more  BMCBI 2010»
15 years 3 months ago
Deriving enzymatic and taxonomic signatures of metagenomes from short read data
Background: We propose a method for deriving enzymatic signatures from short read metagenomic data of unknown species. The short read data are converted to six pseudo-peptide cand...
Uri Weingart, Erez Persi, Uri Gophna, David Horn
153
Voted
BMCBI
2011
14 years 7 months ago
A Beta-Mixture Model for Dimensionality Reduction, Sample Classification and Analysis
Background: Patterns of genome-wide methylation vary between tissue types. For example, cancer tissue shows markedly different patterns from those of normal tissue. In this paper ...
Kirsti Laurila, Bodil Oster, Claus L. Andersen, Ph...
119
Voted
CIKM
2001
Springer
15 years 8 months ago
The Enosys Markets Data Integration Platform: Lessons from the Trenches
Enosys Markets offers a state-of-the-art data integration software platform to support the development of the next generation of eBusiness applications that deliver value by provi...
Yannis Papakonstantinou, Vasilis Vassalos