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» Gene functional classification from heterogeneous data
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BIOINFORMATICS
2005
105views more  BIOINFORMATICS 2005»
13 years 10 months ago
MADE4: an R package for multivariate analysis of gene expression data
Summary: MADE4, microarray ade4, is a software package that facilitates multivariate analysis of microarray gene expression data. MADE4 accepts a wide variety of gene expression d...
Aedín C. Culhane, Jean Thioulouse, Guy Perr...
BMCBI
2008
173views more  BMCBI 2008»
13 years 10 months ago
Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
Background: Microarray experiments measure changes in the expression of thousands of genes. The resulting lists of genes with changes in expression are then searched for biologica...
Stephen W. Tanner, Pankaj Agarwal
BMCBI
2008
121views more  BMCBI 2008»
13 years 10 months ago
Stability of gene contributions and identification of outliers in multivariate analysis of microarray data
Background: Multivariate ordination methods are powerful tools for the exploration of complex data structures present in microarray data. These methods have several advantages com...
Florent Baty, Daniel Jaeger, Frank Preiswerk, Mart...
BMCBI
2005
92views more  BMCBI 2005»
13 years 10 months ago
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Background: In a previous report (La et al., Proteins, 2005), we have demonstrated that the identification of phylogenetic motifs, protein sequence fragments conserving the overal...
David La, Dennis R. Livesay
PRL
2007
98views more  PRL 2007»
13 years 9 months ago
Error probabilities for local extrema in gene expression data
Current approaches for the prediction of functional relations from gene expression data often do not have a clear methodology for extracting features and are not accompanied by a ...
Perry Groot, Christian Gilissen, Michael Egmont-Pe...