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» Gene set analysis for longitudinal gene expression data
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ISMDA
2001
Springer
14 years 1 months ago
Web-Enabled Knowledge-Based Analysis of Genetic Data
We present a web-based implementation of GenePath, an intelligent assistant tool for data analysis in functional genomics. GenePath considers mutant data and uses expert-defined pa...
Peter Juvan, Blaz Zupan, Janez Demsar, Ivan Bratko...
BIBE
2001
IEEE
193views Bioinformatics» more  BIBE 2001»
14 years 17 days ago
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data
Effective analysis of genome sequences and associated functional data requires access to many different kinds of biological information. For example, when analysing gene expressio...
Mike Cornell, Norman W. Paton, Shengli Wu, Carole ...
BMCBI
2008
111views more  BMCBI 2008»
13 years 9 months ago
Information-based methods for predicting gene function from systematic gene knock-downs
Background: The rapid annotation of genes on a genome-wide scale is now possible for several organisms using high-throughput RNA interference assays to knock down the expression o...
Matthew T. Weirauch, Christopher K. Wong, Alexandr...
RECOMB
2008
Springer
14 years 9 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
BIOINFORMATICS
2006
135views more  BIOINFORMATICS 2006»
13 years 9 months ago
Effective similarity measures for expression profiles
It is commonly accepted that genes with similar expression profiles are functionally related. However, there are many ways one can measure the similarity of expression profiles, a...
Golan Yona, William Dirks, Shafquat Rahman, David ...