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» Gene set analysis for longitudinal gene expression data
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NAR
2007
135views more  NAR 2007»
13 years 8 months ago
g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments
g:Profiler (http://biit.cs.ut.ee/gprofiler/) is a public web server for characterising and manipulating gene lists resulting from mining high-throughput genomic data. g:Profiler h...
Jüri Reimand, Meelis Kull, Hedi Peterson, Jaa...
KDD
2005
ACM
137views Data Mining» more  KDD 2005»
14 years 9 months ago
Pattern-based similarity search for microarray data
One fundamental task in near-neighbor search as well as other similarity matching efforts is to find a distance function that can efficiently quantify the similarity between two o...
Haixun Wang, Jian Pei, Philip S. Yu
RECOMB
2002
Springer
14 years 9 months ago
A bayesian approach to transcript estimation from gene array data: the BEAM technique
We present a new statistically optimal approach to estimate transcript levels and ratios from one or more gene array experiments. The Bayesian Estimation of Array Measurements (BE...
Ron O. Dror, Jonathan G. Murnick, Nicola A. Rinald...
BMCBI
2008
169views more  BMCBI 2008»
13 years 9 months ago
A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification
Background: Cancer diagnosis and clinical outcome prediction are among the most important emerging applications of gene expression microarray technology with several molecular sig...
Alexander R. Statnikov, Lily Wang, Constantin F. A...
BMCBI
2010
97views more  BMCBI 2010»
13 years 9 months ago
Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach
Background: For heterogeneous tissues, such as blood, measurements of gene expression are confounded by relative proportions of cell types involved. Conclusions have to rely on es...
Dirk Repsilber, Sabine Kern, Anna Telaar, Gerhard ...