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» Gene set analysis for longitudinal gene expression data
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BMCBI
2010
134views more  BMCBI 2010»
13 years 8 months ago
ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data
Background: Many high-throughput genomic experiments, such as Synthetic Genetic Array and yeast two-hybrid, use colony growth on solid media as a screen metric. These experiments ...
John C. Dittmar, Robert J. D. Reid, Rodney Rothste...
BMCBI
2010
153views more  BMCBI 2010»
13 years 8 months ago
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is an assay used for investigating DNA-protein-binding or post-translational chromatin/histone ...
Benedikt Zacher, Pei Fen Kuan, Achim Tresch
BIBE
2006
IEEE
123views Bioinformatics» more  BIBE 2006»
14 years 2 months ago
Isolation and Visualization of Codon Usage Biases
While genomic sequencing projects have proved an abundant source of information for biological studies ranging from the molecular to the ecological in scale, much of the informati...
Douglas W. Raiford, Dan E. Krane, Travis E. Doom, ...
BMCBI
2010
156views more  BMCBI 2010»
13 years 8 months ago
Global screening of potential Candida albicans biofilm-related transcription factors via network comparison
Background: Candida albicans is a commonly encountered fungal pathogen in humans. The formation of biofilm is a major virulence factor in C. albicans pathogenesis and is related t...
Yu-Chao Wang, Chung-Yu Lan, Wen-Ping Hsieh, Luis A...
JIB
2010
107views more  JIB 2010»
13 years 3 months ago
Integration of -omics data and networks for biomedical research with VANTED
Increasingly, research focus in the fields of biology and medicine moves from the investigation of single phenomena to the analysis of complex cause and effect relationships. The ...
Christian Klukas, Falk Schreiber