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» Gene set analysis for longitudinal gene expression data
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TREC
2007
13 years 9 months ago
Language Models for Genomics Information Retrieval: UIUC at TREC 2007 Genomics Track
The University of Illinois at Urbana-Champaign (UIUC) participated in TREC 2007 Genomics Track. Our general goal of participation is to apply language modelbased approaches to the...
Yue Lu, Jing Jiang, Xu Ling, Xin He, ChengXiang Zh...
BMCBI
2008
118views more  BMCBI 2008»
13 years 8 months ago
Kismeth: Analyzer of plant methylation states through bisulfite sequencing
Background: There is great interest in probing the temporal and spatial patterns of cytosine methylation states in genomes of a variety of organisms. It is hoped that this will sh...
Eyal Gruntman, Yijun Qi, R. Keith Slotkin, Ted Roe...
BMCBI
2008
145views more  BMCBI 2008»
13 years 8 months ago
Directed acyclic graph kernels for structural RNA analysis
Background: Recent discoveries of a large variety of important roles for non-coding RNAs (ncRNAs) have been reported by numerous researchers. In order to analyze ncRNAs by kernel ...
Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubum...
ICML
2008
IEEE
14 years 9 months ago
Expectation-maximization for sparse and non-negative PCA
We study the problem of finding the dominant eigenvector of the sample covariance matrix, under additional constraints on the vector: a cardinality constraint limits the number of...
Christian D. Sigg, Joachim M. Buhmann
MLG
2007
Springer
14 years 2 months ago
Abductive Stochastic Logic Programs for Metabolic Network Inhibition Learning
Abstract. We revisit an application developed originally using Inductive Logic Programming (ILP) by replacing the underlying Logic Program (LP) description with Stochastic Logic Pr...
Jianzhong Chen, Stephen Muggleton, Jose Santos