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» Gene set analysis using principal components
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151
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PAMI
2010
192views more  PAMI 2010»
15 years 2 months ago
Multiway Spectral Clustering with Out-of-Sample Extensions through Weighted Kernel PCA
—A new formulation for multiway spectral clustering is proposed. This method corresponds to a weighted kernel principal component analysis (PCA) approach based on primal-dual lea...
Carlos Alzate, Johan A. K. Suykens
167
Voted
IMSCCS
2006
IEEE
15 years 9 months ago
Combining Comparative Genomics with de novo Motif Discovery to Identify Human Transcription Factor DNA-Binding Motifs
Background: As more and more genomes are sequenced, comparative genomics approaches provide a methodology for identifying conserved regulatory elements that may be involved in gen...
Linyong Mao, W. Jim Zheng
146
Voted
ISMDA
2005
Springer
15 years 9 months ago
Relevance, Redundancy and Differential Prioritization in Feature Selection for Multiclass Gene Expression Data
The large number of genes in microarray data makes feature selection techniques more crucial than ever. From various ranking-based filter procedures to classifier-based wrapper tec...
Chia Huey Ooi, Madhu Chetty, Shyh Wei Teng
158
Voted
TCBB
2008
107views more  TCBB 2008»
15 years 3 months ago
Coclustering of Human Cancer Microarrays Using Minimum Sum-Squared Residue Coclustering
It is a consensus in microarray analysis that identifying potential local patterns, characterized by coherent groups of genes and conditions, may shed light on the discovery of pre...
Hyuk Cho, Inderjit S. Dhillon
123
Voted
BMCBI
2008
122views more  BMCBI 2008»
15 years 3 months ago
Determining gene expression on a single pair of microarrays
Background: In microarray experiments the numbers of replicates are often limited due to factors such as cost, availability of sample or poor hybridization. There are currently fe...
Robert W. Reid, Anthony A. Fodor