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» Gene set analysis using principal components
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BMCBI
2008
202views more  BMCBI 2008»
13 years 10 months ago
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
Background: Integrating data from multiple global assays and curated databases is essential to understand the spatiotemporal interactions within cells. Different experiments measu...
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Ro...
IJBRA
2008
66views more  IJBRA 2008»
13 years 10 months ago
Integer programming-based approach to allocation of reporter genes for cell array analysis
Abstract Observing behaviors of protein pathways and genetic networks under various environments in living cells is essential for unraveling disease and developing drugs. For that ...
Morihiro Hayashida, Fuyan Sun, Sachiyo Aburatani, ...
BIBM
2007
IEEE
137views Bioinformatics» more  BIBM 2007»
14 years 5 months ago
A Multi-metric Similarity Based Analysis of Microarray Data
Clustering has been shown to be effective in analyzing functional relationships of genes. However, no single clustering method with single distance metric is capable of capturing ...
Fatih Altiparmak, Selnur Erdal, Ozgur Ozturk, Haka...
BMCBI
2004
124views more  BMCBI 2004»
13 years 10 months ago
Tests for finding complex patterns of differential expression in cancers: towards individualized medicine
Background: Microarray studies in cancer compare expression levels between two or more sample groups on thousands of genes. Data analysis follows a population-level approach (e.g....
James Lyons-Weiler, Satish Patel, Michael J. Becic...
DILS
2005
Springer
14 years 4 months ago
Integrating Heterogeneous Microarray Data Sources Using Correlation Signatures
Abstract. Microarrays are one of the latest breakthroughs in experimental molecular biology. Thousands of different research groups generate tens of thousands of microarray gene e...
Jaewoo Kang, Jiong Yang, Wanhong Xu, Pankaj Chopra