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» GeneBox: Interactive Visualization of Microarray Data Sets
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BMCBI
2004
94views more  BMCBI 2004»
13 years 6 months ago
Caryoscope: An Open Source Java application for viewing microarray data in a genomic context
Background: Microarray-based comparative genome hybridization experiments generate data that can be mapped onto the genome. These data are interpreted more easily when represented...
Ihab A. B. Awad, Christian A. Rees, Tina Hernandez...
KDD
2009
ACM
174views Data Mining» more  KDD 2009»
14 years 1 months ago
Visual exploration of categorical and mixed data sets
For categorical data there does not exist any similarity measure which is as straight forward and general as the numerical distance between numerical items. Due to this it is ofte...
Sara Johansson
BMCBI
2005
124views more  BMCBI 2005»
13 years 6 months ago
ErmineJ: Tool for functional analysis of gene expression data sets
Background: It is common for the results of a microarray study to be analyzed in the context of biologically-motivated groups of genes such as pathways or Gene Ontology categories...
Homin K. Lee, William Braynen, Kiran Keshav, Paul ...
BMCBI
2008
106views more  BMCBI 2008»
13 years 6 months ago
SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi,
Background: Over 60% of protein-coding genes in vertebrates express mRNAs that undergo alternative splicing. The resulting collection of transcript isoforms poses significant chal...
Michael C. Ryan, Barry Zeeberg, Natasha J. Caplen,...
BMCBI
2004
149views more  BMCBI 2004»
13 years 6 months ago
MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states
Background: Information obtained by DNA microarray technology gives a rough snapshot of the transcriptome state, i.e., the expression level of all the genes expressed in a cell po...
Gaëlle Lelandais, Philippe Marc, Pierre Vince...