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» Generality Is Predictive of Prediction Accuracy
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EMNLP
2009
15 years 27 days ago
Graphical Models over Multiple Strings
We study graphical modeling in the case of stringvalued random variables. Whereas a weighted finite-state transducer can model the probabilistic relationship between two strings, ...
Markus Dreyer, Jason Eisner
CORR
2010
Springer
110views Education» more  CORR 2010»
15 years 15 days ago
Provenance and evidence in UniProtKB
Abstract. The primary mission of UniProt is to support biological research by maintaining a stable, comprehensive, fully classified, richly and accurately annotated protein sequenc...
Jerven Bolleman, Alain Gateau, Sebastien Gehant, N...
IPPS
2010
IEEE
15 years 11 days ago
Runtime checking of serializability in software transactional memory
Abstract--Ensuring the correctness of complex implementations of software transactional memory (STM) is a daunting task. Attempts have been made to formally verify STMs, but these ...
Arnab Sinha, Sharad Malik
BMCBI
2010
104views more  BMCBI 2010»
14 years 10 months ago
A systematic study of genome context methods: calibration, normalization and combination
Background: Genome context methods have been introduced in the last decade as automatic methods to predict functional relatedness between genes in a target genome using the patter...
Luciana Ferrer, Joseph M. Dale, Peter D. Karp
BMCBI
2011
14 years 10 months ago
N-gram analysis of 970 microbial organisms reveals presence of biological language models
Background: It has been suggested previously that genome and proteome sequences show characteristics typical of natural-language texts such as “signature-style” word usage ind...
Hatice U. Osmanbeyoglu, Madhavi Ganapathiraju