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BIOINFORMATICS
2010
250views more  BIOINFORMATICS 2010»
15 years 1 months ago
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
Summary: High-throughput RNA sequencing (RNA-seq) is rapidly emerging as a major quantitative transcriptome profiling platform. Here we present DEGseq, an R package to identify di...
Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xu...
CORR
2011
Springer
147views Education» more  CORR 2011»
14 years 9 months ago
A Generalized Method for Integrating Rule-based Knowledge into Inductive Methods Through Virtual Sample Creation
Hybrid learning methods use theoretical knowledge of a domain and a set of classified examples to develop a method for classification. Methods that use domain knowledge have been ...
Ridwan Al Iqbal
BIOINFORMATICS
2005
109views more  BIOINFORMATICS 2005»
15 years 2 months ago
Prediction error estimation: a comparison of resampling methods
In genomic studies, thousands of features are collected on relatively few samples. One of the goals of these studies is to build classifiers to predict the outcome of future obser...
Annette M. Molinaro, Richard Simon, Ruth M. Pfeiff...
CSB
2005
IEEE
115views Bioinformatics» more  CSB 2005»
15 years 8 months ago
A New Clustering Strategy with Stochastic Merging and Removing Based on Kernel Functions
With hierarchical clustering methods, divisions or fusions, once made, are irrevocable. As a result, when two elements in a bottom-up algorithm are assigned to one cluster, they c...
Huimin Geng, Hesham H. Ali
CSB
2002
IEEE
169views Bioinformatics» more  CSB 2002»
15 years 7 months ago
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network
We propose a new statistical method for constructing a genetic network from microarray gene expression data by using a Bayesian network. An essential point of Bayesian network con...
Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Abur...