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BIOCOMP
2006
14 years 8 days ago
Performance of Sequence Alignment Bioinformatics Applications on General Purpose Processors: A Case Study
- Aligning specific sequences against other known sequences in a database is a central aspect of bioinformatics. New experimental data being added continuously to these databases n...
Pradeep Nair, Eugene John
WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
14 years 5 months ago
A General Framework for Local Pairwise Alignment Statistics with Gaps
We present a novel dynamic programming framework that allows one to compute tight upper bounds for the p-values of gapped local alignments in pseudo–polynomial time. Our algorith...
Pasi Rastas
BMCBI
2010
115views more  BMCBI 2010»
13 years 11 months ago
Multiconstrained gene clustering based on generalized projections
Background: Gene clustering for annotating gene functions is one of the fundamental issues in bioinformatics. The best clustering solution is often regularized by multiple constra...
Jia Zeng, Shanfeng Zhu, Alan Wee-Chung Liew, Hong ...
BIB
2002
135views more  BIB 2002»
13 years 10 months ago
Pise: Software for Building Bioinformatics Webs
Pise is interface construction software for bioinformatics applications that run by commandline operations. It creates common, easy to use interfaces to these for the Web, or othe...
Don Gilbert
CSB
2005
IEEE
121views Bioinformatics» more  CSB 2005»
14 years 4 months ago
K-means+ Method for Improving Gene Selection for Classification of Microarray Data
Heng Huang, Rong Zhang, Fei Xiong, Fillia Makedon,...