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KELSI
2004
Springer
14 years 3 months ago
A Randomized Algorithm for Distance Matrix Calculations in Multiple Sequence Alignment
Multiple sequence alignment (MSA) is a vital problem in biology. Optimal alignment of multiple sequences becomes impractical even for a modest number of sequences [1] since the gen...
Sanguthevar Rajasekaran, Vishal Thapar, Hardik Dav...
BIBM
2009
IEEE
118views Bioinformatics» more  BIBM 2009»
14 years 1 months ago
Inexact Local Alignment Search over Suffix Arrays
We describe an algorithm for finding approximate seeds for DNA homology searches. In contrast to previous algorithms that use exact or spaced seeds, our approximate seeds may conta...
Mohammadreza Ghodsi, Mihai Pop
GECCO
2006
Springer
171views Optimization» more  GECCO 2006»
14 years 1 months ago
A hybrid genetic search for multiple sequence alignment
This paper proposes a hybrid genetic algorithm for multiple sequence alignment. The algorithm evolves guide sequences and aligns input sequences based on the guide sequences. It a...
Seung-Hyun Moon, Sung-Soon Choi, Byung Ro Moon
ATAL
2007
Springer
14 years 4 months ago
A formal model for situated semantic alignment
Ontology matching is currently a key technology to achieve the semantic alignment of ontological entities used by knowledge-based applications, and therefore to enable their inter...
Manuel Atencia, W. Marco Schorlemmer
ACL
1996
13 years 11 months ago
High-Performance Bilingual Text Alignment Using Statistical and Dictionary Information
This paper describes an accurate and robust text alignment system for structurally different languages. Among structurally different languages such as Japanese and English, there ...
Masahiko Haruno, Takefumi Yamazaki