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WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
14 years 2 months ago
A General Framework for Local Pairwise Alignment Statistics with Gaps
We present a novel dynamic programming framework that allows one to compute tight upper bounds for the p-values of gapped local alignments in pseudo–polynomial time. Our algorith...
Pasi Rastas
CVPR
2009
IEEE
15 years 2 months ago
Global Optimization for Alignment of Generalized Shapes
In this paper, we introduce a novel algorithm to solve global shape registration problems. We use gray-scale “images” to represent source shapes, and propose a novel twocompo...
Hongsheng Li (Lehigh University), Tian Shen (Lehig...
IPMI
2009
Springer
14 years 2 months ago
Generalized L2-Divergence and Its Application to Shape Alignment
This paper proposes a novel and robust approach to the groupwise point-sets registration problem in the presence of large amounts of noise and outliers. Each of the point sets is r...
Fei Wang, Baba C. Vemuri, Tanveer Fathima Syeda-Ma...
PAMI
2011
13 years 2 months ago
Approximately Global Optimization for Robust Alignment of Generalized Shapes
—In this paper, we introduce a novel method to solve shape alignment problems. We use gray-scale “images” to represent source shapes, and propose a novel two-component Gaussi...
Hongsheng Li, Tian Shen, Xiaolei Huang
BMCBI
2010
90views more  BMCBI 2010»
13 years 7 months ago
Local alignment of generalized k-base encoded DNA sequence
Background: DNA sequence comparison is a well-studied problem, in which two DNA sequences are compared using a weighted edit distance. Recent DNA sequencing technologies however o...
Nils Homer, Stanley F. Nelson, Barry Merriman