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BIBM
2009
IEEE
172views Bioinformatics» more  BIBM 2009»
14 years 2 months ago
Identifying Gene Signatures from Cancer Progression Data Using Ordinal Analysis
—A comprehensive understanding of cancer progression may shed light on genetic and molecular mechanisms of oncogenesis, and it may provide much needed information for effective d...
Yoon Soo Pyon, Jing Li
CBMS
2009
IEEE
14 years 3 months ago
On the storage, management and analysis of (multi) similarity for large scale protein structure datasets in the grid
Assessment of the (Multi) Similarity among a set of protein structures is achieved through an ensemble of protein structure comparison methods/algorithms. This leads to the genera...
Gianluigi Folino, Azhar Ali Shah, Natalio Krasnogo...
BIBM
2009
IEEE
155views Bioinformatics» more  BIBM 2009»
14 years 3 months ago
Towards Reliable Isoform Quantification Using RNA-Seq Data
Background: In eukaryotes, alternative splicing often generates multiple splice variants from a single gene. Here weexplore the use of RNA sequencing (RNA-Seq) datasets to address...
Brian E. Howard, Steffen Heber
IPPS
2002
IEEE
14 years 2 months ago
Parallel Out-of-Core Algorithm for Genome-Scale Enumeration of Metabolic Systemic Pathways
Systemic pathways-oriented approaches to analysis of metabolic networks are effective for small networks but are computationally infeasible for genome scale networks. Current comp...
Nagiza F. Samatova, Al Geist, George Ostrouchov, A...
KDD
2002
ACM
109views Data Mining» more  KDD 2002»
14 years 9 months ago
Topics in 0--1 data
Large 0-1 datasets arise in various applications, such as market basket analysis and information retrieval. We concentrate on the study of topic models, aiming at results which in...
Ella Bingham, Heikki Mannila, Jouni K. Seppän...