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» Genome Annotation and Comparison System
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NAR
2007
90views more  NAR 2007»
13 years 9 months ago
The SUPERFAMILY database in 2007: families and functions
The SUPERFAMILY database provides protein domain assignments, at the SCOP ‘superfamily’ level, for the predicted protein sequences in over 400 completed genomes. A superfamily...
Derek Wilson, Martin Madera, Christine Vogel, Cyru...
EDBT
2008
ACM
166views Database» more  EDBT 2008»
14 years 10 months ago
OrthoCluster: a new tool for mining synteny blocks and applications in comparative genomics
By comparing genomes among both closely and distally related species, comparative genomics analysis characterizes structures and functions of different genomes in both conserved a...
Xinghuo Zeng, Matthew J. Nesbitt, Jian Pei, Ke Wan...
BMCBI
2006
149views more  BMCBI 2006»
13 years 10 months ago
Curation of viral genomes: challenges, applications and the way forward
Background: Whole genome sequence data is a step towards generating the 'parts list' of life to understand the underlying principles of Biocomplexity. Genome sequencing ...
Urmila Kulkarni-Kale, Shriram Bhosle, G. Sunitha M...
RECOMB
2003
Springer
14 years 10 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
DASFAA
2010
IEEE
195views Database» more  DASFAA 2010»
14 years 1 months ago
BIDEL: An XML-Based System for Effective Fast Change Detection of Genomic and Proteomic Data
Abstract. A key issue to address in biological data integration is how to detect changes to the underlying biological data sources. In this demonstration, we present a novel system...
Song Yang, Sourav S. Bhowmick