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» Genome Annotation and Comparison System
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EMNLP
2004
13 years 11 months ago
Evaluating Information Content by Factoid Analysis: Human annotation and stability
We present a new approach to intrinsic summary evaluation, based on initial experiments in van Halteren and Teufel (2003), which combines two novel aspects: comparison of informat...
Simone Teufel, Hans van Halteren
BMCBI
2010
131views more  BMCBI 2010»
13 years 10 months ago
FACT: Functional annotation transfer between proteins with similar feature architectures
Background: The increasing number of sequenced genomes provides the basis for exploring the genetic and functional diversity within the tree of life. Only a tiny fraction of the e...
Tina Koestler, Arndt von Haeseler, Ingo Ebersberge...
CSB
2005
IEEE
161views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Data Integration in the Mouse Genome Informatics (MGI) Database
The Mouse Genome Informatics (MGI) Database at The Jackson Laboratory provides a comprehensive public resource about the laboratory mouse. MGI curated data types include gene repr...
Donnie Qi, Judith A. Blake, James A. Kadin, Joel E...
BMCBI
2010
122views more  BMCBI 2010»
13 years 4 months ago
Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PF
Background: A new paradigm of biological investigation takes advantage of technologies that produce large high throughput datasets, including genome sequences, interactions of pro...
Troy Hawkins, Meghana Chitale, Daisuke Kihara
LREC
2008
149views Education» more  LREC 2008»
13 years 11 months ago
ANNALIST - ANNotation ALIgnment and Scoring Tool
In this paper we describe ANNALIST (Annotation, Alignment and Scoring Tool), a scoring system for the evaluation of the output of semantic annotation systems. ANNALIST has been de...
George Demetriou, Robert J. Gaizauskas, Haotian Su...