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BIOINFORMATICS
2004
86views more  BIOINFORMATICS 2004»
13 years 9 months ago
Transposable element annotation of the rice genome
Motivation: The high content of repetitive sequences in the genomes of many higher eukaryotes renders the task of annotating them computationally intensive. Presently, the only wi...
Nikoleta Juretic, Thomas E. Bureau, Richard M. Bru...
AGENTS
2001
Springer
14 years 2 months ago
A multi-agent system for automated genomic annotation
Massive amounts of raw data are currently being generated by biologists while sequencing organisms. Outside of the largest, high-pro le projects such as the Human Genome Project, ...
Keith Decker, Xiaojing Zheng, Carl Schmidt
CIA
2001
Springer
14 years 2 months ago
Extending a Multi-agent System for Genomic Annotation
The explosive growth in genomic (and soon, expression and proteomic) data, exemplified by the Human Genome Project, is a fertile domain for the application of multi-agent informat...
Keith Decker, Salim Khan, Carl Schmidt, Dennis Mic...
BMCBI
2008
95views more  BMCBI 2008»
13 years 10 months ago
Universal seeds for cDNA-to-genome comparison
Background: To meet the needs of gene annotation for newly sequenced organisms, optimized spaced seeds can be implemented into cross-species sequence alignment programs to accurat...
Leming Zhou, Jonathan Stanton, Liliana Florea
BMCBI
2008
187views more  BMCBI 2008»
13 years 10 months ago
PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
Background: The conservation of gene order among prokaryotic genomes can provide valuable insight into gene function, protein interactions, or events by which genomes have evolved...
Christine Fong, Laurence Rohmer, Matthew Radey, Mi...