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IJKDB
2010
141views more  IJKDB 2010»
15 years 1 months ago
Mining Frequent Boolean Expressions: Application to Gene Expression and Regulatory Modeling
Regulatory network analysis and other bioinformatics tasks require the ability to induce and represent arbitrary boolean expressions from data sources. We introduce a novel framew...
Mohammed Javeed Zaki, Naren Ramakrishnan, Lizhuang...
BMCBI
2008
188views more  BMCBI 2008»
15 years 4 months ago
anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data
Background: Compared to other omics techniques, quantitative metabolomics is still at its infancy. Complex sample preparation and analytical procedures render exact quantification...
Nicola Zamboni, Anne Kümmel, Matthias Heinema...
141
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ER
2007
Springer
109views Database» more  ER 2007»
15 years 7 months ago
Selfish-brain Theory: Challenges in the Top-down Analysis of Metabolic Supply Chains
The Selfish-brain theory has created the theoretical basis for the systemic analysis of the energy metabolism in terms of a supply chain. The energy in form of glucose equivalents...
Dirk Langemann
BMCBI
2008
161views more  BMCBI 2008»
15 years 4 months ago
Inferring gene expression dynamics via functional regression analysis
Background: Temporal gene expression profiles characterize the time-dynamics of expression of specific genes and are increasingly collected in current gene expression experiments....
Hans-Georg Müller, Jeng-Min Chiou, Xiaoyan Le...
BMCBI
2008
133views more  BMCBI 2008»
15 years 4 months ago
SPIKE - a database, visualization and analysis tool of cellular signaling pathways
Background: Biological signaling pathways that govern cellular physiology form an intricate web of tightly regulated interlocking processes. Data on these regulatory networks are ...
Ran Elkon, Rita Vesterman, Nira Amit, Igor Ulitsky...