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SYNASC
2007
IEEE
119views Algorithms» more  SYNASC 2007»
14 years 3 months ago
Graph Rewriting and Strategies for Modeling Biochemical Networks
In this paper, we present a rewriting framework for modeling molecular complexes, biochemical reaction rules, and generation of biochemical networks based on the representation of...
Oana Andrei, Hélène Kirchner
COMPGEOM
2004
ACM
14 years 2 months ago
Single-strip triangulation of manifolds with arbitrary topology
Triangle strips have been widely used for efficient rendering. It is NP-complete to test whether a given triangulated model can be represented as a single triangle strip, so many...
David Eppstein, M. Gopi
WADT
1998
Springer
14 years 11 days ago
An Algebra of Graph Derivations Using Finite (co-) Limit Double Theories
Graph transformation systems have been introduced for the formal specification of software systems. States are thereby modeled as graphs, and computations as graph derivations acco...
Andrea Corradini, Martin Große-Rhode, Reiko ...
ICIAR
2005
Springer
14 years 2 months ago
Robust Global Mosaic Topology Estimation for Real-Time Applications
This paper proposes an iterative methodology for real-time robust mosaic topology inference. It tackles the problem of optimal feature selection (optimal sampling) for global estim...
Nuno Pinho da Silva, João Paulo Costeira
CSB
2005
IEEE
110views Bioinformatics» more  CSB 2005»
14 years 2 months ago
A Topological Measurement for Weighted Protein Interaction Network
High-throughput methods for detecting protein-protein interactions (PPI) have given researchers an initial global picture of protein interactions on a genomic scale. The usefulnes...
Pengjun Pei, Aidong Zhang