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» Graph clustering with network structure indices
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BMCBI
2008
116views more  BMCBI 2008»
13 years 7 months ago
A novel representation of RNA secondary structure based on element-contact graphs
Background: Depending on their specific structures, noncoding RNAs (ncRNAs) play important roles in many biological processes. Interest in developing new topological indices based...
Wenjie Shu, Xiaochen Bo, Zhiqiang Zheng, Shengqi W...
PKDD
2007
Springer
132views Data Mining» more  PKDD 2007»
14 years 1 months ago
An Algorithm to Find Overlapping Community Structure in Networks
Recent years have seen the development of many graph clustering algorithms, which can identify community structure in networks. The vast majority of these only find disjoint commun...
Steve Gregory
SAC
2006
ACM
14 years 1 months ago
Mining and analyzing the topological structure of protein-protein interaction networks
We report a comprehensive evaluation of the topological structure of protein-protein interaction (PPI) networks by mining and analyzing graphs constructed from the publicly availa...
Daniel Duanqing Wu, Xiaohua Hu
BMCBI
2010
214views more  BMCBI 2010»
13 years 7 months ago
AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number
Background: Clustering the information content of large high-dimensional gene expression datasets has widespread application in "omics" biology. Unfortunately, the under...
Aaron M. Newman, James B. Cooper
JDCTA
2010
130views more  JDCTA 2010»
13 years 2 months ago
A Search Algorithm for Clusters in a Network or Graph
A novel breadth-first based structural clustering method for graphs is proposed. Clustering is an important task for analyzing complex networks such as biological networks, World ...
Dongming Chen, Jing Wang, Xiaodong Chen, Xiaowei X...