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CSB
2003
IEEE
124views Bioinformatics» more  CSB 2003»
14 years 2 months ago
SMASHing regulatory sites in DNA by human
Regulatory sequence elements provide important clues to understanding and predicting gene expression. Although the binding sites for hundreds of transcription factors are known, t...
Mihaela Zavolan, Nicholas D. Socci, Nikolaus Rajew...
BIBM
2010
IEEE
151views Bioinformatics» more  BIBM 2010»
13 years 7 months ago
Probabilistic topic modeling for genomic data interpretation
Recently, the concept of a species containing both core and distributed genes, known as the supra- or pangenome theory, has been introduced. In this paper, we aim to develop a new ...
Xin Chen, Xiaohua Hu, Xiajiong Shen, Gail Rosen
BMCBI
2005
117views more  BMCBI 2005»
13 years 8 months ago
HmtDB, a Human Mitochondrial Genomic Resource Based on Variability Studies Supporting Population Genetics and Biomedical Researc
Background: Population genetics studies based on the analysis of mtDNA and mitochondrial disease studies have produced a huge quantity of sequence data and related information. Th...
Marcella Attimonelli, Matteo Accetturo, Monica San...
BMCBI
2008
132views more  BMCBI 2008»
13 years 9 months ago
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...
SAC
2008
ACM
13 years 8 months ago
A clustering-based approach for discovering interesting places in trajectories
Because of the large amount of trajectory data produced by mobile devices, there is an increasing need for mechanisms to extract knowledge from this data. Most existing works have...
Andrey Tietbohl Palma, Vania Bogorny, Bart Kuijper...