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SDM
2008
SIAM
112views Data Mining» more  SDM 2008»
13 years 10 months ago
A pattern mining approach toward discovering generalized sequence signatures
Typically, sequence signatures, such as motifs and domains, are assumed to be localized in one region of a sequence or are derived as combinations of the former. We generalize the...
Dietmar H. Dorr, Anne Denton
BMCBI
2007
129views more  BMCBI 2007»
13 years 9 months ago
Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach
Background: Incorrectly annotated sequence data are becoming more commonplace as databases increasingly rely on automated techniques for annotation. Hence, there is an urgent need...
Carson M. Andorf, Drena Dobbs, Vasant Honavar
AO
2011
112views more  AO 2011»
13 years 3 months ago
The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data
Biomedical Ontologies are intended to integrate diverse biomedical data to enable intelligent datamining and facilitate translation of basic research into useful clinical knowledg...
Robert Hoehndorf, Colin R. Batchelor, Thomas Bittn...
BMCBI
2010
172views more  BMCBI 2010»
13 years 9 months ago
Accessing the SEED genome databases via Web services API: tools for programmers
Background: The SEED integrates many publicly available genome sequences into a single resource. The database contains accurate and up-to-date annotations based on the subsystems ...
Terry Disz, Sajia Akhter, Daniel Cuevas, Robert Ol...
BMCBI
2008
121views more  BMCBI 2008»
13 years 9 months ago
BioSAVE: Display of scored annotation within a sequence context
Background: Visualization of sequence annotation is a common feature in many bioinformatics tools. For many applications it is desirable to restrict the display of such annotation...
Richard F. Pollock, Boris Adryan