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» Graphical Models of Residue Coupling in Protein Families
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BMCBI
2008
98views more  BMCBI 2008»
13 years 7 months ago
PredGPI: a GPI-anchor predictor
Background: Several eukaryotic proteins associated to the extracellular leaflet of the plasma membrane carry a Glycosylphosphatidylinositol (GPI) anchor, which is linked to the C-...
Andrea Pierleoni, Pier Luigi Martelli, Rita Casadi...
JMLR
2010
105views more  JMLR 2010»
13 years 2 months ago
Collective Inference for Extraction MRFs Coupled with Symmetric Clique Potentials
Many structured information extraction tasks employ collective graphical models that capture interinstance associativity by coupling them with various clique potentials. We propos...
Rahul Gupta, Sunita Sarawagi, Ajit A. Diwan
BMCBI
2008
97views more  BMCBI 2008»
13 years 7 months ago
SiteSeek: Post-translational modification analysis using adaptive locality-effective kernel methods and new profiles
Background: Post-translational modifications have a substantial influence on the structure and functions of protein. Post-translational phosphorylation is one of the most common m...
Paul D. Yoo, Yung Shwen Ho, Bing Bing Zhou, Albert...
BMCBI
2006
102views more  BMCBI 2006»
13 years 7 months ago
Taking U out, with two nucleases?
Background: REX1 and REX2 are protein components of the RNA editing complex (the editosome) and function as exouridylylases. The exact roles of REX1 and REX2 in the editosome are ...
I. Saira Mian, Elizabeth A. Worthey, Reza Salavati
BMCBI
2010
141views more  BMCBI 2010»
13 years 7 months ago
BioPhysConnectoR: Connecting Sequence Information and Biophysical Models
Background: One of the most challenging aspects of biomolecular systems is the understanding of the coevolution in and among the molecule(s). A complete, theoretical picture of th...
Franziska Hoffgaard, Philipp Weil, Kay Hamacher