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BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
14 years 3 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
SSDBM
2002
IEEE
122views Database» more  SSDBM 2002»
14 years 2 months ago
ATreeGrep: Approximate Searching in Unordered Trees
An unordered labeled tree is a tree in which each node has a string label and the parent-child relationship is significant, but the order among siblings is unimportant. This pape...
Dennis Shasha, Jason Tsong-Li Wang, Huiyuan Shan, ...
CSB
2004
IEEE
149views Bioinformatics» more  CSB 2004»
14 years 1 months ago
Weighting Features to Recognize 3D Patterns of Electron Density in X-Ray Protein Crystallography
Feature selection and weighting are central problems in pattern recognition and instance-based learning. In this work, we discuss the challenges of constructing and weighting feat...
Kreshna Gopal, Tod D. Romo, James C. Sacchettini, ...
ICDE
2007
IEEE
182views Database» more  ICDE 2007»
14 years 11 months ago
DIKNN: An Itinerary-based KNN Query Processing Algorithm for Mobile Sensor Networks
Current approaches to K Nearest Neighbor (KNN) search in mobile sensor networks require certain kind of indexing support. This index could be either a centralized spatial index or...
Shan-Hung Wu, Kun-Ta Chuang, Chung-Min Chen, Ming-...
VLDB
2008
ACM
103views Database» more  VLDB 2008»
14 years 10 months ago
The optimal sequenced route query
Several variations of nearest neighbor (NN) query have been investigated by the database community. However, realworld applications often result in the formulation of new variatio...
Mehdi Sharifzadeh, Mohammad R. Kolahdouzan, Cyrus ...