Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
Saurabh Sinha, Mark D. Schroeder, Ulrich Unnerstal...
Topic models provide a powerful tool for analyzing large text collections by representing high dimensional data in a low dimensional subspace. Fitting a topic model given a set of...
We present a class of richly structured, undirected hidden variable models suitable for simultaneously modeling text along with other attributes encoded in different modalities. O...
The study of gene function is critical in various genomic and proteomic fields. Due to the availability of tremendous amounts of different types of protein data, integrating thes...
Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon ...