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» HYPE Applied to the Modelling of Hybrid Biological Systems
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CMSB
2006
Springer
13 years 11 months ago
Type Inference in Systems Biology
Type checking and type inference are important concepts and methods of programming languages and software engineering. Type checking is a way to ensure some level of consistency, d...
François Fages, Sylvain Soliman
CMSB
2009
Springer
14 years 2 months ago
The Equivalence between Biology and Computation
A major challenge in computational systems biology is the articulation of a biological process in a form which can be understood by the biologist yet is amenable to computational e...
John K. Heath
CMSB
2004
Springer
14 years 24 days ago
Developing SBML Beyond Level 2: Proposals for Development
Abstract. The Systems Biology Markup Language (SBML) is an XMLbased exchange format for computational models of biochemical networks. SBML Level 2, whose definition was establishe...
Andrew Finney
CMSB
2010
Springer
13 years 2 months ago
Stochasticity in reactions: a probabilistic Boolean modeling approach
Boolean modeling frameworks have long since proved their worth for capturing and analyzing essential characteristics of complex systems. Hybrid approaches aim at exploiting the ad...
Sven Twardziok, Heike Siebert, Alexander Heyl
JCP
2008
121views more  JCP 2008»
13 years 7 months ago
Towards Design Space Exploration for Biological Systems
For both embedded systems and biological cell systems, design is a feature that defines their identity. The assembly of different components in designs of both systems can vary wid...
Simon Polstra, Tessa E. Pronk, Andy D. Pimentel, T...