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TCBB
2011
13 years 2 months ago
Accurate Construction of Consensus Genetic Maps via Integer Linear Programming
—We study the problem of merging genetic maps, when the individual genetic maps are given as directed acyclic graphs. The computational problem is to build a consensus map, which...
Yonghui Wu, Timothy J. Close, Stefano Lonardi
STTT
2008
86views more  STTT 2008»
13 years 7 months ago
Properties of state spaces and their applications
Explicit model checking algorithms explore the full state space of a system. State spaces are usually treated as directed graphs without any specific features. We gather a large co...
Radek Pelánek
CSDA
2010
118views more  CSDA 2010»
13 years 7 months ago
Grapham: Graphical models with adaptive random walk Metropolis algorithms
Recently developed adaptive Markov chain Monte Carlo (MCMC) methods have been applied successfully to many problems in Bayesian statistics. Grapham is a new open source implementat...
Matti Vihola
ARSCOM
1998
104views more  ARSCOM 1998»
13 years 7 months ago
A Note on the Road-Coloring Conjecture
Some results relating to the road-coloring conjecture of Alder, Goodwyn, and Weiss, which give rise to an O(n2) algorithm to determine whether or not a given edge-coloring of a gra...
E. Gocka, Walter W. Kirchherr, Edward F. Schmeiche...
CPM
2005
Springer
116views Combinatorics» more  CPM 2005»
14 years 1 months ago
Exact and Approximation Algorithms for DNA Tag Set Design
In this paper we propose new solution methods for designing tag sets for use in universal DNA arrays. First, we give integer linear programming formulations for two previous formal...
Ion I. Mandoiu, Dragos Trinca